Biomedical Sciences Datasets
SciServer currently includes datasets from two biomedical research project, both looking at the structure of cancer cells.
Each dataset is listed in an expandable section below. Expand it to learn what each dataset contains and how to access it.
Astropath tumor microenvironment data
What it is: The AstroPath data volume contains the public release of the AstroPath multiplex immunofluorescence slides, saved in the .zarr format, as well as associated metadata tables. It also includes processed data used in analysis for publications.
How to access: Join the AstroPath Science Domain from your dashboard’s Science Domains page. Once you are a member, create a SciServer Compute container and mount the data volumes starting with `ap`.
CyTOF Atlas
What it is: The data volume CyTOF_Atlas stores the datasets used for the Pancreatic cancer immunotherapy study, which curates a single cell proteomics atlas of human PBMCs from three combination immunotherapy clinical trials in metastatic PDAC patients to disentangle individual effects of cancer vaccines, GVAX and CRS-207, and immune checkpoint blockade therapies, anti-PD-1, and anti-CTLA-4. The data volume is protein-level annotated from immunotherapy-treated cancer patients and serves the purpose of enabling non-computationally inclined immunologists and cancer biologists to explore the datasets and computational applications.
How to access: Join the Genomics Science Domain from your dashboard’s Science Domains page. Once you are a member, create a SciServer Compute container and mount the CyTOF Atlas Data Volume.
See the CyTOF Atlas dataset page for more information.